The IRB data warning is one I keep seeing people skip over and it matters. Research workflows have a specific trust problem - you're often working with data that's one mistake away from a compliance issue, and Claude Code's default behavior is to read everything in the project directory.
The context window degradation point is also underappreciated (most people just keep going until outputs get weird). Good that you're building the Markus Academy series around this - researchers need the setup guide more than developers do tbh, the stakes for getting it wrong are higher.
Commenting so I remember to come back when I have time to follow along more closely.
The IRB data warning is one I keep seeing people skip over and it matters. Research workflows have a specific trust problem - you're often working with data that's one mistake away from a compliance issue, and Claude Code's default behavior is to read everything in the project directory.
The context window degradation point is also underappreciated (most people just keep going until outputs get weird). Good that you're building the Markus Academy series around this - researchers need the setup guide more than developers do tbh, the stakes for getting it wrong are higher.
Super useful thanks!